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SAAM II™
Simulation Analysis and Modeling II

Windows Software for ODE-based modeling prototyping, simulation, and fit.
Fully graphic, easy, and powerful.
PK · PK-PD · Systems · Dosimetry · PBPK · Complex Kinetics · Metabolism
Originated at NIH · Developed at University of Washington · Shaped by decades of modeling with compartments.


  • Interface → Drag and drop model building (easy learning curve)
  • Reliability → Trusted by industry, academia and gov researchers for 30 years

SAAM II demo animation
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USERS HIGHLIGHTS

  • Licensing → 1- or 3-year, machine-locked · discounted academic & nonprofit pricing
  • Platform → Native Windows · macOS supported via virtual machines
  • Longevity → Used across academia, government, and industry for 30+ years
  • User retention → Very high renewal rates across long-term users
  • Scientific footprint → Referenced in ~50 peer-reviewed publications per year
  • Learning curve → Fully graphical workflow · fast onboarding without loss of modeling power
  • Validation → Numerically robust1, 2 and extensively validated by long-term users
  • Performance → Optimized for large ODE systems and computationally intensive models
  • Adoption → 50+ countries
  • FDA milestone → Padova–UVA diabetes simulator designed in SAAM II (2008, MAF-1521)3

SPECS HIGHLIGHTS
  • Core language Computational kernels optimized in C
  • ODE solversStiff and non-stiff solvers with adaptive step size
  • Multi-fitModified weighted least squares
  • BayesianMaximum a posteriori (MAP) estimation option
  • Forcing-function methodEnables optimization of complex dynamic systems
  • Virtual populationsGeneration of virtual normal populations
  • Batch processingHigh-throughput individual fitting across hundreds of subjects
  • Population PK add-onTwo-stage approach built on individual fits
  • Sensitivity analysisLocal sensitivity methods
  • ComplexityNear-linear scaling · Fitting models tested up to ~400 compartments
page2023
Model Visuals → Design simple and complex models · Perazzolo Simone · PAGE conference 2023 & Lipoproteins models in Barrett 1998

Show case study examples

PBPK Models → Prototype new structures and kinetics · Reference software in dosimetry and radionuclide modeling

PBPK

L Cheng et al. A multicompartment stomach physiologically-based pharmacokinetic model capturing gastric reacidification can improve food effect predictions of weak bases, J Pharm Sci, 2026

A Kamp et al. A revised compartmental model for biokinetics and dosimetry of 2-[18F]FDG, EJMMI Physics, 2023

Car-T kinetics

Mechanistic immune model in SAAM II
Perazzolo et al., CPT Pharmacometrics Syst Pharm 2024

Drug–disease dynamics → Intracellular PK drives viral inactivation and treatment response

HIV viral dynamics with treatment in SAAM II
Perazzolo et al., CPT Pharmacometrics Syst Pharm 2024

Epidemiology → Epidemiological models implemented and fit in SAAM II ·

Epidemiological infection model fit in SAAM II
Perazzolo et al., CPT Pharmacometrics Syst Pharm 2024

Long-acting drug products → complex multi-phasic PK

Epidemiological infection model fit in SAAM II
Perazzolo et al., CPT Pharmacometrics Syst Pharm 2024

QSP

Epidemiological infection model fit in SAAM II
Vicini...
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MATERIAL & LINKS
  • History (30 years of SAAM II)
  • Tutorials
    • CPT Pharmacometrics paper
    • Basic and advanced detailed
    • Workshops Archive
  • Population PK add-on
  • Conferences & Societies
    • Conferences
    • David Bourne (boomer)
    • PAGE
    • Society of Nuclear Medicine & molecular Imaging
  • Socials
    • Linkedin
    • X.com
  • Relevant PK Publications
  • Relevant Dosimetry Publications
  • Relevant Classic Publications
  • Books